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Could store the time series in memory as a dictionary of lists; the list items are the y values and the y names are the keys
y = {} # declare empty dictionary
# ynames: names of y curves
for name in ynames:
y[name] = [] # for each key, make empty list
lines = ifile.readlines() # list of all lines
...
for line in lines[3:]:
yvalues = [float(x) for x in line.split()]
i = 0 # counter for yvalues
for name in ynames:
y[name].append(yvalues[i]); i += 1
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